DreINT0081270 @ danRer10
Intron Retention
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13710962-13713044:+
Coord C1 exon
chr3:13710962-13711114
Coord A exon
chr3:13711115-13712906
Coord C2 exon
chr3:13712907-13713044
Length
1792 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
GGTATTTTCTGCTCTCTCAGAAT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTCTTGCAAGACATGGGTCTGCCCACAGGAATGGACCAGAAGACCACTGAACTGATGAAGGTGGACGAGCCGGTGAGCACACAGGAGACTTTGCCCCCAGTCATCAAAATGGAGCCAGAACCTGTACCAATTACAGAAACCCCAACTGACGAG
Seq A exon
GTATTGGGATCATCTTTATGACATTGATTAATCAAGCTTGTGGCCAATATTACAGATTGCACTACTCTTCCGTTTTAGTAAAGTAGTCATATGCGTGTACTAGTATAGTTAACGGTCAAAAATAGTTAATATTAATGGTCAAAAGTTGAAGGTTGCTGCGATCATAGTGGCAGATAAGAGGCAGAAGTGGCACAGAAGTCGCTAATGAAATGATTATTTGAGCACAACAATAAAGAAAAATAAACAATACAACTATTTATGAAGGTATTTTCAGGCTTGTTCAGCTAAATCAATTGATCTGAACAACAGAGGCGTTTAAAATTTTCAAAACAAATGTTGTTAACTAAATTAACATCCTGAAAAAGGAAATGTTATGTTTGACGTGATAAATATACCAAATAAATGTACTCTATTGAATGAATTGTATGTTGAACACCAGATCAGCATATTAGAATTATTGACACTGAATACTGGGGTAATGGTGGTAAATGTTCATGTTAGGGCTGGGCAATAAATTGATTTTATTGAGTGTGAAATTCACATTGATTTGTTAGGGTAAAAATGATTTTTATTCACCTGAGAATGTAGTTCCCCTTTACATTTGCCATAGAGAAACACAAACAACATGGCAGCGTCAGCAGTCAAGGAAGATATCAGACAATAGTTTTGGTCTTTTAAAAAAATAATAATAAAAATTTTAAAAAAAGACTGCTAAACAAACGTTCCTGCCAAAAAAGCCGACATAATTCAGGGCTCTGTCACACATTTACTGCTTCTCATGCTTCTCAAAAGTAAAGGGTGAGACAATAATGGACAAGATGTGCATATGAAAGGAATTGTTATCGATCTAATGTTGAATTCCAATGTTTCTGTTTTCGGGTGAGTGACGCAAAAAAACGTTCAGTACAGTAAATATCAACACTGACAAAACTCACTCAATTCACTATTAAAAGCAATCATGCAAATTAAAGCAATAAAATGCAACCCACTAGCCTAATGTGAGTAATTTATAGGAACTGATATAACACAAAATAAAAATGAATAAACCTCTGAATGAATGTTCATTGAAAAACATTAAATAAATCATCTTAAAAAAGGTCCTCATTTTAGCAATCATTATGTGAGCACTTTCACTGTAATTGTAAAAAATGGTTTAGTTGATTTTTATAAAAGTCTTGAATAGTATTGTAAATAGATATTGTTACATTTGATCTTTAAATGACTTCATGAGCTTTCTTTAGCATTTTTATATCCTAGAATTATGAAATGGTAAACTTTTCTGGTGGGAAAAATTTATTTAAATCAAATCAAATTTTCTGTTTAAAAGATCTGGGATTCCAACTAGGACCGCCCAGCCCTAGTTACAGTATTTAAAAAATGCAGTATTTTACATTTTCACAGAATTCATCAATTATTAGCATCTTTGAGCAGAACATTCAAAAGCATTTGTAGGAATAATCATTTAGTTATGTTTTGTTGTTGATGTCTTTATTATAGAGATGCTATTTATAAACTGTTAAAATATAAACAGTTTAAACTGTTTAGGTCTAAATTTTATGTTTATTGTTTACTTTTACTTTAATTTCTTCCATAAAATAGTCATTTGTTGATTTGACAAACTCTAATCTCTCTCAGAACCAAAATGAACAAACTGTCTTTTTTTTCCCCATACATAATGCTTTACGTGCACAAAATTGCATGTCAAACGTAATGTCTTATTTTTACTTTGCATAGCTTAACTTTGGCTGATGAATATATTTTGTATGTTGTTTGGTATTTTCTGCTCTCTCAG
Seq C2 exon
AATGCTCGACAGCAGGGACCCATCCTGACCAAACATGGCAAGAACCCAGTGATGGAGCTCAATGAGAAACGCAGAGGGCTGAAGTATGAGCTCATCTCTGAGACCGGGGGAAGCCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177:ENSDART00000162317:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=44.4)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGGAATGGACCAGAAG
R:
CTCCATGACGAAGCGTTTGTC
Band lengths:
270-2062
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]