BtaALTA0015487-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42934392-42935594:-
Coord C1 exon
chr19:42935470-42935594
Coord A exon
chr19:42934553-42934635
Coord C2 exon
chr19:42934392-42934552
Length
83 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CACCACCCCTCTCCTCTTAGAAC
3' ss Score
8.76
Exon sequences
Seq C1 exon
AAAACTCCCTTGGCAGGAGGGGAGCCAGCTCAAGACTTCGATCTGCCAGGAGGCAGAGCCGTACTGTCCTACACCGACTGACCGGCCACTTTGGCCGCCGGGGCCAGGGAGGCATGAAAACCAAT
Seq A exon
AACGTGTTTGAGCCAAAGCCATCAGTGCCCGAATACAAGGTGGCCTCCGTGGGGGGGTCCCGCTGCCTCCTCCTCCACTACAG
Seq C2 exon
CGTCCCCAAAGCCGTCTGGGATGGCCTCATCCTCCTTGCCACCTTCTATGTTGCGGTCACTGTCCCCTACAACGTCTGCTTCTCGGGTGATGATGACACCCCCATCACGTCCCGACACACCCTTGTCAGCGACATCGCCGTGGAGATGCTCTTCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(5.7=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCGATCTGCCAGGAGG
R:
AGAAGCAGACGTTGTAGGGGA
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development