GgaALTA0001643-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003354 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr27:4852555-4853608:-
Coord C1 exon
chr27:4853481-4853608
Coord A exon
chr27:4852716-4852798
Coord C2 exon
chr27:4852555-4852715
Length
83 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GCTGCCCTCTGCTCCTTCAGAAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
AGAAGCAGAGGAGCAAGAAACCCGGCAGCTCACACCTGCGGGCGGCACGGCGGCAGGGCCGGACGGTGCTGCACCGGCTCAGCAGCCAGTTTGCACGGCAGGACCGCGGTGAGATGAAAATCAATCGG
Seq A exon
AATGTGTTTGAGAACAAGCCCTCCATCCCCGAGTACAAGGTGGCCTCGGTGCAGAAAGCCCACTTCATCCTGCTGCACTACAG
Seq C2 exon
CATCTTCAAGGCCCTCTGGGACTGGCTGATCCTGGTGGCCACTTTTTATGTGGCTGTCACTGTCCCCTACAACGTCTGCTTCACCAGCACGGAGGACAGCCTCTCGGCCGCACGCAGCACCATCGTCAGTGACATCGCGGTGGAGATGCTCTTCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-6-8,6-7,6-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=PU(10.0=16.3)
A:
NA
C2:
PF084125=Ion_trans_N=PD(87.1=74.4),PF0052026=Ion_trans=PU(5.7=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAGGAGCAAGAAACCC
R:
AAAAGTGGCCACCAGGATCAG
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]