BtaALTA0015495-1/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012798 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr1:138582405-138583713:+
Coord C1 exon
chr1:138582405-138582604
Coord A exon
NA
Coord C2 exon
chr1:138583464-138583713
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TCTTTCATCTTCTCTGGCAGCTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
CCTTGATGCACGCCCTGGTGTTCGGAAACGTGACAGCGATCATCCAGAGGATGTACTCCAGGTGGTCCCTCTATCACAGCAGAACCAAGGATCTGAAGGACTTCATCCGTGTCCATCACCTGCCCCAGCAGCTCAAGCAGAGGATGCTGGAGTATTTCCAGACAACCTGGTCAGTCAACAATGGAATAGATTCCAATGAG
Seq A exon
NA
Seq C2 exon
CTTTTGAAGGACTTCCCAGACGAGCTCCGCTCCGACATCACCATGCACCTGAACAAGGAGATCTTGCAGCTGTCCCTGTTCGAGTGTGCCAGCCGGGGCTGCCTGCGGTCTCTGTCTCTGCACATCAAAACCTCCTTCTGCGCCCCTGGGGAGTACCTGCTGCGCCAGGGGGACGCTTTGCAGGCCATCTACTTCGTGTGCTCGGGCTCCATGGAGGTTCTTAAAGACAGCACGGTGCTGGCCATCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012798-14-17,14-16,14-15,14-14-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACAGCGATCATCCAGAG
R:
CAGGGACAGCTGCAAGATCTC
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development