MmuALTA0009524-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:53033240-53038028:+
Coord C1 exon
chr17:53033240-53033439
Coord A exon
chr17:53037779-53037926
Coord C2 exon
chr17:53037927-53038028
Length
148 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CCTGCCCTCTTTCCCACCAGCTT
3' ss Score
10.1
Exon sequences
Seq C1 exon
CCCTGATGCATGCCTTAGTATTTGGGAACGTGACTGCCATCATACAGAGAATGTACTCTAGATGGAGCCTGTACCACACTAGAACCAAGGACCTAAAAGACTTCATCCGTGTGCACCACCTGCCCCAGCAACTCAAGCAGAGGATGCTCGAGTACTTTCAGACAACTTGGTCAGTCAACAATGGGATAGATTCAAATGAG
Seq A exon
CTTTTAAAAGACTTTCCAGATGAGCTGCGCTCTGACATCACAATGCATCTGAACAAGGAGATCTTACAGCTGTCCCTGTTCGAATGTGCCAGCCGGGGCTGCCTCAGGTCTCTGTCTCTCCATATTAAAACCTCCTTTTGTGCTCCAG
Seq C2 exon
GAGAGTATCTGCTGCGCCAGGGGGATGCTTTGCAGGCCATCTACTTCGTGTGCTCAGGCTCTATGGAAGTTCTTAAAGACAGCATGGTGTTGGCTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-10-10,10-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGAACGTGACTGCCATC
R:
AGAGCCTGAGCACACGAAGTA
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: