BtaALTA0015533-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93656526-93658001:-
Coord C1 exon
chr4:93657900-93658001
Coord A exon
chr4:93656691-93656780
Coord C2 exon
chr4:93656526-93656690
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TTTCTCCTCCCCTCCTGCAGGGG
3' ss Score
12.25
Exon sequences
Seq C1 exon
GTGGACGGGCGCCCTGTGGCCTTGCCCTTCCTGCAGGAACCGCTGTTCTATGTAGAGCTTCGGGGACGCACGGTGGTGCTGCACTCCCAGCCAGGGCTCCAG
Seq A exon
GGGGCATGCTGACACACCACAGAGACGGGCCCTGGGCTTCCTGGGGCCCCTGGCTTTCTCCTGCTCTCCAGTCCCCACCTCTCTGCACAG
Seq C2 exon
GTGCTGTGGGATGGGCGGTCCCAGGTGGAGGTGAGAGTGCCTGGCTCCTACCGGGGCCACATGTGTGGGCTCTGCGGCAACTTCAATGGCTTTGCCCAGGATGACCTGCGGGACCCTGAGGAACTGCTCCGGTCCACTGAGGCTGCATTTGGGAATAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-53-58,53-57-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(22.0=100)
A:
NA
C2:
PF0009420=VWD=PD(27.3=74.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGGAACCGCTGTT
R:
CAAAGCCATTGAAGTTGCCGC
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development