BtaINT0079963 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93656526-93658001:-
Coord C1 exon
chr4:93657900-93658001
Coord A exon
chr4:93656691-93657899
Coord C2 exon
chr4:93656526-93656690
Length
1209 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
GTCCCCACCTCTCTGCACAGGTG
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTGGACGGGCGCCCTGTGGCCTTGCCCTTCCTGCAGGAACCGCTGTTCTATGTAGAGCTTCGGGGACGCACGGTGGTGCTGCACTCCCAGCCAGGGCTCCAG
Seq A exon
GTGCGGCCGGGGCCAGTGCAGGGCAGGGGGCGCCTGTTCTGTAGGAGGGGTAATACCAACTACCTGCCAGGCCATGGGGCCAAGGAGCTGATAGAGTTCTGCGGGATTCTAGGGGGAAGAGGAATCAGGGCTAGAGAACTCCAGGTGTGATGAAAGGAGTTCTGAGCCTGGTTTCCAGCCACCGATGTGCTGGGGCTCTTAGGCCATTACCTTAAGCCAGTCCTCTGAGTGAGTGAGTGAAGTTGCTCGGTCGTGTCGGACCCTTTGTGATCCCATGGACTGTAGCCTACCAGGCTCCTCCATCCATGGAATTTTCCAGGCAAGAATACTGGAATGGGTTGCCATTTCCTTCTCTAGGGGATATTCCCTACCCAGGGATCGAACCCAGGTCTCCCACATTGCAGACAGACACTTTACCAACTGAGCCACCAGGGAAGCCAGTCCTCTGGGCCTCAGCTTTCCCATCCCTCAAGTGGGGGAAGCGGGGGGCATTGTCAACTACCCTCTCCTAGATGGTTTCAGAGATTCCAATTCCCATGTCAAAAAGTAATTCACTCCCTTGCCTCCAGCCACAAGCACATTTGTAAGTATACAAAATATGGCTTATCTACACTTAGGATGGGGCTTCCCAGTTGACACTAGTGGTAAAGAACGTGCCCGCCAATGCAGGAAACATAAAAGACGCAGGTTTGATCCCTGAGTTGGGAAGATCTCCTGGAGGAGGGTATAGCAACCCACTCCAGTATTCTTGCCTAGAAAATCCCATGGACAGAGGAAACTGGTGGGCTATAGTCCATGGGGGTCACACAAAGTCAGACATGACTGAAGCAACTTAGCACACACGAAAACTTAGGATACAGACTCTATTTGTGCTTTGTCCTCTGTAAGGCCTGAATGCCCGTGAGGGAGTGAATCTCTGGAAGTGGGTTGCATTTCACGGGGAAGCCTAGCTCAGGGATGATGACGGGAGAAGGTGCCCTCCTGAGGGAGCTGTGTTCACCTCTTCACGTCTTCTGTGTTTGCCCAGGGCTGACACCGCAGGTGTCTTCCTGGCCTTGGCTAGAGCAAGCCTCCCTTTCCTGAGGCACTCCACCTGTCCTTTCTCCTCCCCTCCTGCAGGGGGCATGCTGACACACCACAGAGACGGGCCCTGGGCTTCCTGGGGCCCCTGGCTTTCTCCTGCTCTCCAGTCCCCACCTCTCTGCACAG
Seq C2 exon
GTGCTGTGGGATGGGCGGTCCCAGGTGGAGGTGAGAGTGCCTGGCTCCTACCGGGGCCACATGTGTGGGCTCTGCGGCAACTTCAATGGCTTTGCCCAGGATGACCTGCGGGACCCTGAGGAACTGCTCCGGTCCACTGAGGCTGCATTTGGGAATAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(22.0=100)
A:
NA
C2:
PF0009420=VWD=PD(27.3=74.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCCCTTCCTGCAGGA
R:
TGCCAGCTATTCCCAAATGCA
Band lengths:
247-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]