MmuINT0085924 @ mm9
Intron Retention
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29433930-29434716:-
Coord C1 exon
chr6:29434615-29434716
Coord A exon
chr6:29434095-29434614
Coord C2 exon
chr6:29433930-29434094
Length
520 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TCCCAAGCCTCTTTGCACAGGTG
3' ss Score
4.94
Exon sequences
Seq C1 exon
GTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACTGTGATCCTGCATGCCCAGCCTGGGCTTCAG
Seq A exon
GTATAGACAGAGGGCAAAACAGGGTGGTCCTGGCACCTCAGCACTTCTAACGCTTCTGTAACTTCCAACGCGTCTGCCTGGTAGGAGGAGGAGAAGGCAGGGGTGAGAAAGTATAAAGTCGGTGGGGATCAGGAGGCAGTCAAGGTGTTCTGAGGACTCTCCCACCTCCCATGTGGGAAAATGATGATCTCTTGCTCGCAGCCCGAGCCATAACTTACAACCCCAAGCTGTGTGCACTTGATCCAAACTCTGATGGCGTTGTACCTTCCTTAAGGCCCCAGGGCAGTGATTCTCAGGAAGAGGGTTTTGTTCCACCTGGAGTCCAGTTGAAAGATGCAGTGGGCAGCTCTCCCACGAGCATTTGGTCAGGCTGTATAACAAGGTACACAGGCTAGGGAAGTGGCCCTTCCATCCCACAGTGCACCTGTCCATCCCACAGCAGGGAGACTATCAAATTAGCTCGTGAACTCCTTGGGGTCTCCGTCCTTCCCCCTCCCTAGTCCCAAGCCTCTTTGCACAG
Seq C2 exon
GTGCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCCAGACTTGTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-Kcp:NM_001029985:35
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(9.8=57.1)
A:
NA
C2:
PF0009420=VWD=PD(52.8=19.4),PF087426=C8=PU(97.4=51.4)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGCACACAGTGACCTTG
R:
TCCAGCTGTTCCCAAACGAAG
Band lengths:
262-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: