BtaALTA0015669-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118161247-118171240:+
Coord C1 exon
chr6:118161247-118164556
Coord A exon
chr6:118171129-118171131
Coord C2 exon
chr6:118171132-118171240
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TGTGTTTGGTTTACTCTAAGCAG
3' ss Score
1.85
Exon sequences
Seq C1 exon
GGATCTCCCCCAGGACTCACTTTCGCCCCATCTCTGCATCTGAACTCTCCCCCGGAGGAGGAAGTGAGTCAGAATTTGAATCCGAGAGAGACGAAGCAAATGTTCCCATTCCTTCTCAAGTCGACGCATTCGAAGATCCACAGGCAGATCTCAAACCGCTTGAAGAGGACGCAGAGAAAGAAGGCCATTACTATGGGAAGTCCGAGCTTGAGTCTGGGAAGTTCCTCCCCAGGTTAAAGAAGTCTGGGATGGAGAAGAGTGCCCAGACATCCCTGGATTCCCAGGAGGAGTCGGCCGGGGTCCTGCCAGCAGGAGAGCGGAACCCGTGTCTGGAGTGCAGCATGAGCGAGCCTCTGGAGATCGACCTGGAAAGCCCAGAAGCAAACTGTAAAATAATGGCACAGTGCGAGGAAGAAATTAATCATTTCTGCAGCTGCAAAGCAGGTTGTCAGTTCCCTGCTTATGAAGATAATCCAGTTTCTTCAGGACAGCTGGAAGAG
Seq A exon
CAG
Seq C2 exon
TTCCCTGTACTGAACACTGACGTGCATGGAATGAACCGGAGTCAAGAGAGACAAACCTGGTGGGAAAAAGCCTTGTACTCGCCTCTCTTCCCCGCCTCGGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427-11-12,11-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.5=100)
A:
NA
C2:
PF153761=DUF4603=PD(2.7=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGTCAGTTCCCTGCTT
R:
ACTCCGGTTCATTCCATGCAC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development