BtaEX0019098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118157451-118171240:+
Coord C1 exon
chr6:118157451-118157532
Coord A exon
chr6:118161247-118164556
Coord C2 exon
chr6:118171132-118171240
Length
3310 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGCTTGTTTTTCCAGGTA
3' ss Score
11.24
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAGAAGTTAGAGGGGTCTCCCTCTCCAGAGGCAGAATTATCGCCCACAGCGAAGGATCAAGTGGAAAT
Seq A exon
GTACTATGAAGCGTTTCCACCGCTGTCCGAGAAGCCAGTTTGCCTGCAGGAAATCATGACCGTGTGGAACAAGTCCGCCGTCGGCTCCTACTCGAGCTCGTCCTCCTCGTCCACAGCCCCTCCAGCCAGCACAGACACGCCCTCCCCCAAGGATTGCAACAGCGAAGGCGAGATCATCCGGGAAAGAAGCGGCGACGCGCCGCCCGCCAGCCTGCACGAGAGAACACAGAGCGGCCGCAGCCACAGCGAGAAGGAGAACAGGTTCAGGAACGGGCCCAGCGAGGAGCGGTCCGCGCCGCCGCCGCCGTCCAAGAAGCAGAGCCGGCACCGGCCGGACGGGAAGCCGCGCCCGCGCTCCTGGTCATCCGGCTCCAGCGAAGCCGGCTCGAGCTCCAGCGGGAACCAGGGGGAGCCCAAGGCGTCCGCGAAGTGCGTGAAGTTGAGGCACAAGGTGCGGGAGATCCGGAACAAGAAAGGAGCGCGCAGCGGGCAGAGCCGGCTCTCGCTGAAGCGCGGCGAGAAGGCGGAGAGAAGCCCACACGCCGCCGGGAGCAGCAGCAGCAGCGGCGGTGGCGGTTCCTTCCGACAGCTGTGCAAGCGGGGCAAGCGGCCGCTGAAGGAGCTGGGCAGGAAGGAGGCGGGGGGTGCCGAGGGCAGAGACCTGTTCCTGGAGAGCAGGACGGACAGGGAGTACAAGGAGGAGCCGCTGTGGTACACCGAGCCCATCGCCGAGTACTTCGTCCCTCTGAGCAGAAAAAGCAAGCTGGAGACCACGTACCGCAACAGGCAAGACGCCGGCGACGTGACCTCAGCAGCTGTGGAGGAGTTGTCCGAGTCAGTGCACGGCCTCTGCATCAGCAACAATAATATTCATAAAACATACCTCGCAGCAGGTACTTTCATCGATGGTCATTTTGTAGAAATGCCTGCAGTCATAAATGAGGACATCGACCTCGCTGGGACCTCATTCTGTCCTCTGCCAGAGGACGACAAATACTTGGATGATATTCATCTGTCAGAACTAACACACTTCTACGAAGTGGATATTGACCAATCCATGTTGGATCCCGGTGCCTCAGAAACCACGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAAGAGAATACCGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGAATGGAGTTGCAAGGGGAACGTGCAATATGGGCAGACTGTACCAGCTCTGTGGGCGCCGAGGGCTTTCTCCTGCAAGACCTTGGCAGCCTGGCCCAGTTCTGGGAGTGCTGTTCGTCCAGCTCTGGCGATGCCGACGGGGAGAGTTTTGCGGGAGACTCCCCGGTTCGACTCTCCCCGACCTTAGACAGCACAGCGCTCAATCCGCATTTGCTGGCCGGCAATCAAGAGCTCTTTTCAGATATTAATGAAGGATCTGGTATAAACTCCTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAATTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAATGAAAATACAGATTCTAGTGCTAACATGCTTGGGAAAACACAGTCTAGATTACTAATATGGACCAAAAATAGTGCCTTCGAGGAAAATGAACACTGTTCTAATCTTTCAACGAGAACTTGCAGTCCGTGGTCCCATTCAGAAGAAACACGTTCAGACAATGAGACGTTAAGCGTCCAGTTTGAAGAGTCCACACAGTTTAACGCAGAGGATATTAACTATGTAGTTCCTAGAGTCTCGTCCAATTATGTAGATGAAGAACTCCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGGACTTTAGGAGAAATCCCAACGTTAGTTTTCCAAAAAAAATCTAAACTAGAATCTATCTGTGGTATTCAGCTAGAACAAAAAGCAGAGAACAAAGCCTTCGAGACGACGCAAGCGTGTAGTGAAGGCAGTCCGCGTGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGCAGACAGAAATTCTGCAGCTCCACTAGAAATAGAAAGCGTTGACGATGAGTTGTTTCCGACAGATGTAAATAACTACTGCTGCTGTTTGGATGCTGAGGCTCCAATGGAGCCCCTCCAGGAGCCAAACAAGGCCGTGCAGAGATCAGAATACCACCTGTGGGAGGGCCAGAAAGAGACCCTGGAGAAGAGAGCCTTTGTGTCCGGCGAGCTGTCCAAGGTGGATGGCGGGGACTACACCACCCCGTCGAAACCCTGGGATGTGACCCAAGACAAAGGGAGCTCATTCATCCTGGGAGGGGTTTACGGGGAGCTCAGAACGCTCAACAGCGATGCAGGGTGGGCGGTCGTACCGCCCAGTCACGCCAAAGGGAGTTTGCTGCAGTGTGCCGCTTCTGACGTGGTGACCATAGCGGGCACAGATGTCTTTATGACCCCCGGAAACAGCTTCGCTCCTGGTCACAGGCAGTTATGGAAGCCCTTTGTGTCCTTGGAACAGAACGACCAGCCGAAGAGCGGGGAAAACGGATTGAATAAGGGATTTTCCTTCATCTTCCATGAAGACTTACTAGGAGCTTGTGGCAACTTTCAAGTTGAAGATCCTGGACTCGAGTATCCCTTCTCTTCTTTTGACTTAAGCAATCCGTTTTCACAAGTTCTCCACGTAGAGTGTTCCTTTGAACCCGAAGGGATTGCATCTTTCAGTCCAAGCTTCAAACCGAAGTCAATCCTCTGCTCTGATTCCGACAGTGAAGTTTTCCACCCCAGGATATGCGACGTCGACAGAACACAGTACCGGGCTATCCGGATCTCCCCCAGGACTCACTTTCGCCCCATCTCTGCATCTGAACTCTCCCCCGGAGGAGGAAGTGAGTCAGAATTTGAATCCGAGAGAGACGAAGCAAATGTTCCCATTCCTTCTCAAGTCGACGCATTCGAAGATCCACAGGCAGATCTCAAACCGCTTGAAGAGGACGCAGAGAAAGAAGGCCATTACTATGGGAAGTCCGAGCTTGAGTCTGGGAAGTTCCTCCCCAGGTTAAAGAAGTCTGGGATGGAGAAGAGTGCCCAGACATCCCTGGATTCCCAGGAGGAGTCGGCCGGGGTCCTGCCAGCAGGAGAGCGGAACCCGTGTCTGGAGTGCAGCATGAGCGAGCCTCTGGAGATCGACCTGGAAAGCCCAGAAGCAAACTGTAAAATAATGGCACAGTGCGAGGAAGAAATTAATCATTTCTGCAGCTGCAAAGCAGGTTGTCAGTTCCCTGCTTATGAAGATAATCCAGTTTCTTCAGGACAGCTGGAAGAG
Seq C2 exon
TTCCCTGTACTGAACACTGACGTGCATGGAATGAACCGGAGTCAAGAGAGACAAACCTGGTGGGAAAAAGCCTTGTACTCGCCTCTCTTCCCCGCCTCGGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.370 C2=0.395
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
PF153761=DUF4603=FE(85.5=100)
C2:
PF153761=DUF4603=PD(2.7=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development