RnoEX0048896 @ rn6
Exon Skipping
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79307829-79318481:+
Coord C1 exon
chr14:79307829-79307910
Coord A exon
chr14:79309847-79313144
Coord C2 exon
chr14:79318373-79318481
Length
3298 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCCTCTGTTTTGCAGGTA
3' ss Score
11.6
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAAAAGTTAGAGGGTTCTCCTTCTCCAGAGGCAGAATTGTCCCCTACAGCAAAGGATCAAGTGGAAAT
Seq A exon
GTACTATGAAGCATTTCCACCACTTTCTGAGAAGCCAGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCTTCATCATCCACAGTCCCACCAGCAAGCACAGATCCATCTTCTCCAAAAGACTGCAACAGTGAGAGCGAAGCCGTCAGAGAGAGAAGCAGTGCCGCCTCCATCCTCACACACGAGAAAGCCCAGAGCAGAAGCAGACACGAGGAGAACAAGTTGAGCCACAGCACCATCGAAGAAAAGCCTGCCTTGTACAAAAAGCAGATCCGACACAAACCTGAAGGGAAGATTCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGCTCAAGTTCAAGTGGTAATCAGGGAGAATTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAAAAAAGGGCGGAATGGGCAAAGCAGGCAGTCACTGAAGCATTGCGGGAAGGCAGAGAGAGGAGTCCATGCAGGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAATGGGTCCATCAGGCAGCTGTGCAAGCGGGGTAAGAGACCAGCAAAGGAGACAGGAAGGAGCGACTCTGGGAACACTGCAGTGAAAGACCTGTATGTGGAGAGCAGGAGCAACAAAGAGTACAAGGAGGAGCCACTGTGGTACACAGAGCCCATTGCTGAGTATTTTGTTCCTTTGAGTAGAAAAAGCAAGCTAGAGACCACATACCGGAACAGGGAAGACACAAGTGCTCTGACAGCAGAGGCTGTGGAAGACTTGTCTGACTCTGTGCGTGGTCTGTGTATCAGCAACAGTAATATCCATAGAACATACCTCGCAGCAGGCACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAACGAGGATATTGACCTCGCTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAATATCTGGATGATATTCATCTATCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAGGAGAATACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCCCTGTGGGTGCTGAGGGCTTCTTCCTGCAAGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGTTGTTCATCTAGTTCTGGTGATGCTGATGGAGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCTATCTTGGACAGCACGATACTCAGTTCACACATGCTTGCTGGCAATCAAGAGCCCTTTTCCAATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTATTTGAAGTGCAATGCAGTAACTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAGTGAACATACAGATTCTAGTGCTAATATGCTGGGGAAAACACAGTCTAGATTGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCATGGTCCCATTCAGAAGAAGCTCGCTCGGACAACGAGACGCTAAACCTTCAGTTTGAAGAATCGACACAGTTTACTGCAGAAGATATTAATTATGTGGTTCCCAGAGTCTCGTCAGATTTTGTAGATGAAGAACTTCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGAGAAATTCCTACATTAGTTTTCAAAAAAAGATCGAAGCTAGAATCTGTGTGTGGTATTCAGCTAGAACAAAAGGCAGAAAGCAAGAACTTTGAAACTACACAAGCATGTGGTGAAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGTGGGTAGGAGTTCTGTGGCTGCAGCAGAGACAGAGCGAGCTGGGGAGGAGTTGTTTTCCACAGACGTAAGTAACTACTGCTGCTGTTTGGACACGGAGGCGAAGATGGAAACCCTTCAGGAGCCCAGTAGGGCTGTGCAGAGATCAGAGTATCATCTCTGGGAGGGACAGAAGGAGAATGTGGAGAAAAGAGCATTTGTCTCTAGTGAGCTGTCCAAGGTGGATGGTGGTGACTACACCACACCCTCTAAACCTTGGGATGTAGCCCAAGATAAAGAGAACACATTCATTCTTGGAGGAGTTTATGGAGAGCTCAAAACGTTCAACAGCGATGGGGAGTGGGCAGTTGTACCACCTGGTCACACAAAAGGGAGCTTGCTACAGTGTGCAGCCTCTGATGTGGTGACAATCGCTGGTACAGATGTCTTTATGACCCCTGGAAACAGCTTTGCTCCTGGTCACAGGCAGCTCTGGAAGCCCTTTGTGTCATTTGAACAGAATGACATGCCGAAGAGCGGGGAAAATGGATTAAACAAGGGGTTTTCTTTTATCTTCCATGAAGACTTGCTAGGAGCCTGCAGTAACTTTCAAGTTGAAGATCCTGGGCTTGAATACTCATTCTCTTCCTTCGACCTAAGCAATCCCTTCTCACAAGTTCTCCATGTAGAGTGCTCATTTGAACCAGAAGGGATTGCGTCTTTTAGCCCTAGTTTCAAGCCGAAATCAATCCTCTGCTCTGATTCAGACAGTGAGGTTTTTCACCCCAGAATATGTGGTGTCGACAGGACACAGTACAGGGCTATTCGAATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCTGAACTCTCCCCTGCAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAAGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTCGAGTCTGGGAAGTTCCTTCCTAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAGCAGGGATCCTGCCAGTGGGAAAACAAAGTCAGTGTTTGGAATGTAACTTTAATGAATCTCTGGGAATAAACTTAGAGAGCTCCACAGCAAACTGTAAAATAATGACACAATGTGAAGAGGAAATGAATGGTTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAGAAGCAGAGCTGGTGGGAAAAGGCTTTGTACTCTCCCCTTTTTCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623_MULTIEX1-5/8=4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.311 C2=0.180
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.2=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
PF153761=DUF4603=FE(85.6=100)
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]