HsaEX1046021 @ hg38
Exon Skipping
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:6858425-6871682:+
Coord C1 exon
chr4:6858425-6858506
Coord A exon
chr4:6862445-6864183
Coord C2 exon
chr4:6871574-6871682
Length
1739 bp
Sequences
Splice sites
3' ss Seq
TGGGAAAACACAGTCTAGATTGC
3' ss Score
-36.35
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAAAAGTTAGAGGGGTCTCCCTCTCCAGAGGCAGAATTATCCCCTCCAGCAAAGGATCAAGTGGAAAT
Seq A exon
TGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAATGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCATGGTCCCATTCAGAAGAAACACGTTCAGACAATGAAACATTAAATATTCAGTTTGAAGAATCCACACAGTTTAATGCCGAAGATATTAATTATGTAGTTCCTAGAGTCTCGTCAAATTATGTAGATGAAGAACTTCTAGATTTTTTGCAAGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGTGAGATTCCTACATTAGTTTTCAAAAAAACATCTAAACTAGAATCCGTCTGTGGTATTCAGCTAGAACAAAAAACAGAAAACAAAAATTTTGAAACTACACAAGTATGTAATGAAAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGCAGACACAAATTCTGTGGCTACAGTAGAAATAGAAAGAACTGATGCTGAGTTGTTTTCGGCAGATGTAAATAACTACTGCTGCTGTCTAGATGCTGAAGCTGAACTGGAGACCCTTCAGGAGCCTGATAAGGCTGTGCGGAGGTCAGAGTACCATCTGTGGGAGGGACAGAAAGAGAGCCTGGAGAAAAGAGCATTTGCTTCTAGTGAGCTATCAAACGTGGATGGTGGTGATTATACAACACCCTCTAAACCCTGGGATGTAGCCCAAGATAAAGAAAACACATTCATTCTTGGAGGAGTTTATGGAGAACTCAAAACCTTCAATAGTGATGGGGAGTGGGCAGTCGTACCACCTAGTCACACAAAAGGAAGTCTGTTACAGTGTGCAGCTTCTGATGTTGTGACGATAGCTGGTACAGATGTCTTTATGACCCCAGGAAACAGTTTTGCTCCTGGGCACAGGCAGTTATGGAAACCCTTCGTGTCATTTGAACAGAATGATCAGCCGAAGAGTGGGGAAAATGGGTTAAATAAGGGATTTTCTTTTATCTTCCATGAAGACTTACTAGGAGCTTGTGGCAACTTTCAAGTCGAAGATCCTGGACTTGAATACTCATTTTCTTCCTTTGACTTAAGCAATCCATTTTCACAAGTTCTTCATGTAGAATGCTCATTTGAACCTGAAGGGATTGCATCTTTCAGCCCCAGTTTTAAACCGAAATCAATCCTCTGTTCTGATTCAGACAGTGAAGTGTTTCACCCCAGGATATGTGGTGTTGACAGAACACAATACAGGGCTATTCGGATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCCGAACTGTCCCCAGGAGGAGGAAGCGAGTCAGAATTTGAATCTGAGAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATATATTTGAAGATCCGCAGGCAGATCTCAAACCTTTGGAAGAAGATGCAGAGAAAGAAGGCCATTACTATGGAAAATCAGAGCTTGAGTCTGGAAAATTCCTTCCCAGGTTAAAAAAATCTGGGATGGAAAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAATCAACTGGGATTCTTTCAGTAGGAAAGCAAAATCAGTGTTTGGAATGTAGCATGAATGAATCCCTGGAAATAGATTTAGAAAGCTCAGAAGCAAATTGTAAAATAATGGCACAATGCGAGGAAGAAATTAATAATTTTTGTGGTTGCAAAGCAGGTTGTCAGTTTCCTGCTTATGAAGATAATCCAGTTTCTTCGGGACAGCTGGAAGAG
Seq C2 exon
TTCCCTGTATTGAACACTGATATACAAGGAATGAATAGAAGTCAAGAAAAACAGACCTGGTGGGAAAAAGCCTTGTACTCTCCTCTTTTTCCTGCATCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871_MULTIEX2-8/11=5-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.326 C2=0.297
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
PF153761=DUF4603=FE(85.5=100)
C2:
PF153761=DUF4603=PD(2.7=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGATTCACAAAAAGTTAGAGG
R:
CTTCACACTCTGATGCAGGAA
Band lengths:
190-1929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains