GgaEX1031637 @ galGal4
Exon Skipping
Gene
ENSGALG00000015538 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:79415581-79431156:+
Coord C1 exon
chr4:79415581-79415647
Coord A exon
chr4:79418374-79421671
Coord C2 exon
chr4:79431075-79431156
Length
3298 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTATATTACTTTCAGGTA
3' ss Score
10.26
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGCTCTGGGATTGAAACTTTAGTGGAGGAGCTTTGCTCCAAACTGAAAGACCTTCAGAGTAAGCAAG
Seq A exon
GTACTATGAAGCATTTCCTCCTCTATCTGAAAAGCCAGTTTGCCTGCAGGAAATTATGACTGTATGGAATAAATCCAAAGTATGCTCTTACTCTAGCTCCTCATCTTCATCCACTGCTCCACCAACTAGCACAGATACATCTTCTCCAAAGGACTGCAATAGTGAAAGTGAAGTAACTAAAGACAGAAGTAATAAAGTACCTGCCGCTGTACACGAAAGAACGCAGCAGAAGAAAAGTAAAAATGAGAAAGAAAACAAGTTTAGTAACAATGCTGTTGAAGATAAGCCTGTTTTGTATAAAAAACAAGTCCGACATAAGTCTGAGGGAAAGATGCGTCCTCGCTCCTGGTCATCTGGATCCAGTGAGGCTGGCTCAAGTTCTAGTGGTAATCAAGGTGAATACAAGGCGTCGATGAAATGCATTAAAGTAAGACACAAAACAAGAGAGGTTCGAAATAAAAAAGGGCGTAATGGGCAAAGCAGGCTTGCAGTGAAATCTGGTGAAAAGGCCGATAGAAAAGTCCACAGCGGAAGCAGTAGCAGCAGTAGCAGCGGGTCCGTCAAACAGCTGTGCAAAAGAGGTAAAAGGCCATTAAAAGAAATTGGAAGAAAAGAAGCTGGCGGTAATGATGGAAAAGATTTGTACATAGACAGCAGAAATGAAAAGGAATATAAAGAAGAACCCTTGTGGTATACTGAGCCGATTACAGAGTACTTTGTTCCTCTTAGCAGAAAAAGCAAGCTGGAGACTACATACCGCAACAGAGAAGATATATGTGGCATAACATCAGAGGCTGTAGAAGAGTTGTCTGAATCAGTGCATGGTCTTTGTATTAGCAACAATAATGTTCATAAAACATACCTCGCAGCAGGTACTTTCATCGATGGTCACTTTGTAGAAATGCCTGCAGTTCTAAATGAGGATATTGACCTCGCTGGGACCTCAGTTTGTTCTCAACCAGAGGACGACAAATATTTAGATGATGTTCATCTGTCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGATATGATGCAAGGGGAGAGTCGGATTTTAAATATGATTCGACAGAAGAGTAAAGAAAAAAATGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGAATGGAGTTGCAAGGGGAAAGTGCAATATGGACAGATTCAACCAGCTCTGTTGGTGCTGAAGGGTGGTTCTTGCAAGACCTTAGTAATTTAGCTCAATTTTGGGAGTGCTGTTCATCTTCTAGTTCTGGCGATGCAGATGGAGAAAGTTTTGGAGGAGATTCTCCTATCAGATTCTCCCCCATCTTAGACAGCACAATGCTTAATTCACATATGCTTGCTGGCAATCAAGAGCTCTTTTCAGATATTAATGAAGGGTCTGGTATAAACTCTTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAACTCTGTTTTACCGTTTTCTTTTGAAACACTCAACTTGGGAAATGAAAATGCAGATTCTAGTAGCACTGCTAATATTCTTGGGAAAACACAGTCTAGGTTGCTAATATGGACCAAAAATAGTGCCTTCGATGAAAATGAACACTGTTCCAATCTTTCAACAAGAACTTGTAGTCCATGGTCACACTCAGAAGAAACACGTTCAGACAATGAGACTTTAAATATTCCGTATGAAGAATCCACGCAATTTAATGCAGAAGATATTAATTATGTAGTTCCTAGAGTGTCTTCAGGTTATGTAGATGAAGAAATTCTAGACTTTTTGCCAGAAGAAACCTGCCAGCAACAAGCTAGAACTTTAGGAGAAATGCCCGCTTTGATTTTCAAGAAAAAATCTAAGCTAGAATCTGTCTGTGGTATTCAGCTAGAACAAAAAGCAGAAAGTAAAGACTTTGAAACTACACAGGGGTGTAGTGCAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGATATTTGGACAAATATGCCAGACAGAAATTCTGCAGCAATGTTAGAAATAGAAGGAATAGAAGATGAATTGTTTTCAACTGATGTAAATAACTATTGCTGCTGTTTGGATACAGAAGCAAAAGTTGAAACCCTCCAGGAGCCCAATAAAGCAGTGCAGAGATCAGAGTATCACCTTTGGGAAGGTCAAAAAGAGAATTTAGAGAAGAGAGCGTTTGTCTCAAATGATTTATCAAAAGTAGATGGTGGTGACTATACTACACCGTCGAAACCTTGGGATGTTAACCAAGATAAAGAAAACTCATTTATACTTGGTGGTGTGTATGGGGAGCTGAAAACATTTAATAGTGATGGAGAATGGGCAGTGGTGCCACCTAGTCACTCAAAAGGGAGCTTATTGCAATGTGCAGCTTCTGATGTAGTGACAATTGCTGGTACAGATGTTTTTATGACTCCAGGTAATAGCTTTGCCCCTGGTCATAGGCAATTATGGAGGCCATTTGTATCATTTGAACAGAGCGATCAATCAAAGAGTGGAGATAATGGATTAAATAAGGGTTTTTCTTTTATCTTCCATGAAGACTTACTGGGAGCTTGTGGTAACTTTCAAGTTGAAGAACCAGGGCTTGAATACTCATTCTCTTCCTTTGACCTGAACAATCCATTTTCTCAAGTTCTTCATGTAGAGTGTTCATTTGAGCCAGAAGGAATTGCATCTTTCAGCCCTAGTTTTAAACCTAAGTCAATTCTGTGCTCTGATTCAGACAGTGAGGTTTTACACCCCAGGATATGTGGTGTTGATCGAACGCAATACAGGGCTATAAGGATTTCTCCAAGGACTCACTTTCGCCCAATTTCTGCATCTGAACTTTCTCCAGGTGGTGGAAGTGAGTCAGAATTTGAATCAGAAAAGGATGAGGGAAGTATTGCTGTCCCTTCTCAAGTAGATGTGTTTGAGGATCCACAAGCAGATCTCAAACCTCTGGAAGAAGATGCAGAAAAAGAAGGGCATTATTATGGAAAATCAGAGCTCGAATCTGGAAAATTTCTTCCCAGATTAAAAAAGTCTGGAATGGAGAAGAGTGCACAAACATCATTGGATTCCCAAGAAGAGTCCACTGGGATGTTACCAGTAGGAAACCAAGATCCGTGTTTAGAATGCAGTATGAAAGAATCCCTAGATGGGAGGGTGATGGAGAGCTCTAAAGTAAACTGCAGAATAGTGGAGCCGCGAGAGGAGACTAGCAGGTTTTGCAGTTGTAAAGCAGGATGCCATTTCCCCAGTTATGAAGATAATCCTGTTTCTTCAGGAGAGCTTGAAGAG
Seq C2 exon
AGAATGAGTGGCAGCCAGGAAAAGCAGTGCTGGTGGGAAAAGGCGCTCTATTCTCCCCTTTTTCCTGCGTCACAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538_MULTIEX1-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.317 C2=0.189
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(1.7=100),PF144001=Transglut_i_TM=FE(23.9=100)
A:
PF153761=DUF4603=FE(85.5=100)
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]