Special

MmuEX6017301 @ mm9

Exon Skipping

Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36950587-36961473:-
Coord C1 exon
chr5:36961392-36961473
Coord A exon
chr5:36955895-36959183
Coord C2 exon
chr5:36950587-36950695
Length
3289 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGCTCTGTTTTGCAGGTA
3' ss Score
11.1
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AAGAGAAGATTCACAAAAAGTTAGAAGGTTCTCCTTCTCCAGAGGAAGAATTGTCCCCTACAGCAAAAGATCAAGTGGAAAT
Seq A exon
GTACTATGAAGCATTTCCACCACTGTCTGAGAAACCGGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCGTCATCATCCACAGTCCCACCAGCAAGCACGGATACATCTTCTCCAAAGGACTGCAACAGTGAGAGTGAAGCCGTCAGAGAGAGAAGCAGTGTCGCCTCTGTCCCCATGCATGAGAAAGCCCAGAGCAGGAGCAGACACGAGAAGGAGAGCAAGCTGAGCAGTAGCACCATCGAAGAAAAGCCTGCCTTTTACAAAAGGCAGATCCGACACAAACCTGAAGGGAAGACGCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGTTCAAGTTCAAGTGGTAACCAAGGAGAGTTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAGAAAAGGGCGGAATGGGCAAAACAGGCATTCACTGAAGCATTGTGGAAAGGCAGAGAGAGGAGTCCATGCAGGCAGTGGTGGCAGCAGCAGCAGCAGCAGCAATGGGTCCATCAGGCAGCTGTGCAAGCGGGGTAAAAGACCAGCAAAGGAGACGGGAAGGAGCGACTCTGGGAACACTGCAGTGAAAGACCTGTATGTGGACAGCAGAAACAACAAAGAGTACAAGGAAGAGCCCCTGTGGTACACAGAGCCCATTGCTGAGTATTTTGTTCCTTTGAGTAGAAAAAGCAAACTAGAGACCACATACCGAAACAGGGAAGATACAAGTACTCTGACAGCAGAGGCAGTGGAAGACTTGTCTGACTCTGTGCGTGGTCTGTGTATCAGTAACAGTAATATCCACAGAACATACCTCGCAGCAGGTACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAACGAGGATATTGACCTCGCTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAGTATCTGGATGATATTCATCTATCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAGGAGAATACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCTCTGTGGGTGCTGAGGGCTTCTTCCTGCAAGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGTTGTTCATCTAGTTCTGGTGATGCTGATGGAGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCTATCTTGGACAGCACGATGCTCAGTTCACACATACTTGCTGGCAATCAAGAGCCCTTTTCCAATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTATTTGAAGTGCAATGCAGTAATTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAGTGAACATGCAGATTCTAGTGCTAATATGCTGGGGAAAACACAGTCTAGATTGCTCATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCGTGGTCCCATTCGGAAGAAGCACGCTCAGACAATGAGACACTAAACATTCAGTTTGAAGAATCGACACAGTTTACTGCAGAAGATATTAATTATGTGGTTCCCAGAGTCTCGTCAGATTTTGTAGATGAAGAGCTTCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGAGAAATTCCTACATTAGTTTTCAAAAAACGATCTAAGCTAGAATCTGTGTGTGGTATTCAGCTAGAACAAAAGGCAGAAAGCAAGAACTTTGAAACTACACATGCATGTAGTGAAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGTAGGTAGGAGTTCTGTGGCTGCAGTAGAGACAGAAAGAACTGGGGAGGAATTGTTTTCCACAGATGTAAATAACTACTGCTGCTGTTTGGATACTGAGGCGAAGATGGAAGCCCTTCAAGAGCCTAGTAGGGCTGTGCAGAGATCAGAGTATCATCTCTGGGAGGGACAGAAGGAGAACATGGAGAAGAGAGCATTTGTCTCTAGTGAGCTGTCCAAGGTGGATGGTGGCGATTACACCACACCCTCTAAACCTTGGGATGTGGCCCAAGATAAGGAGAACACATTCATTCTTGGAGGAGTTTATGGAGAGCTCAAAACATTCAACAGTGATGGGGAGTGGGCAGTTGTACCACCTGGTCACACAAAAGGGAGCTTGCTACAGTGTGCAGCCTCTGATGTGGTGACAATCGCCGGTACAGATGTCTTTATGACCCCTGGAAACAGCTTTGCTCCTGGTCACAGGCAGCTCTGGAAGCCCTTTGTGTCATTTGAACAGAGTGACATGCCGAAGAGCGGGGAAAATGGAGTAAACAAGGGGTTTTCTTTTATCTTCCATGAAGACTTGCTAGGAGCCTGCAGTAACTTTCAAGTTGAAGATCCTGGCCTTGAATACTCACTCTCTTCCTTTGACCTAAGCAACCCCTTCTCACAAGTTCTCCACGTAGAGTGTTCATTTGAACCAGAAGGGATTGCATCTTTTAGCCCCAGTTTCAAGCCGAAATCAATCCTCTGCTCTGATTCAGACAGTGAGGTTTTTCACCCCAGAATATGTGGTGTCGAAAGGACACAGTACAGGGCTATTCGAATCTCTCCCCGGACTCACTTTCGCCCGATTTCTGCATCTGAACTATCCCCTGGAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCGAGTGTTCCCATTCCTTCCCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAGGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTTGAGTCTGGGAAGTTCCTGCCCAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAACTGGGATTCTGCCGAAACAAAATCAGTGTTTGGAATGTAACTTTAACGAATCTCTAGAAATTAATTTAGAAAGCTCAGCAGCAAACTGTAAAATAATGACACAATGTGAGGAAGAGATGAGTGAGTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAAAAGCAGAGCTGGTGGGAAAAAGCTTTGTACTCTCCCCTTTTCCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-'16-19,'16-17,19-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.929 A=0.317 C2=0.270
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF153761=DUF4603=FE(2.1=100)

							
A:
PF153761=DUF4603=FE(85.6=100)

							
C2:
PF153761=DUF4603=PD(2.7=91.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000031091





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000031091f2540A, ENSMUSP00000084825, ENSMUSP00000116548
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr4:6860901-6861324 
HIGH PSI
HsaEX0033526
(KIAA0232)
Human
(hg19)
chr4:6862628-6865910 
HIGH PSI
HsaEX0033526
(KIAA0232)
Rat
(rn6)
chr14:79309847-79313144 
ALTERNATIVE
RnoEX0048896
(LOC680039)
Cow
(bosTau6)
chr6:118161247-118164556 
ALTERNATIVE
BtaEX0019098
(KIAA0232)
Chicken
(galGal4)
chr4:79418374-79421671 
HIGH PSI
GgaEX1031637
(KIAA0232)
Chicken
(galGal3)
chr4:82810368-82813665 
HIGH PSI
GgaEX1031637
(KIAA0232)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"