GgaEX1031637 @ galGal3
Exon Skipping
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82808925-82823150:+
Coord C1 exon
chr4:82808925-82809006
Coord A exon
chr4:82810368-82813665
Coord C2 exon
chr4:82823042-82823150
Length
3298 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTATATTACTTTCAGGTA
3' ss Score
10.26
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGGAGAAGATTCACAAAAAGTTAGAAGGCTCATTGTCTCCTGAGGCTGATTTATCTCCCACAGCAAAGGATCAAGTAGAAAT
Seq A exon
GTACTATGAAGCATTTCCTCCTCTATCTGAAAAGCCAGTTTGCCTGCAGGAAATTATGACTGTATGGAATAAATCCAAAGTATGCTCTTACTCTAGCTCCTCATCTTCATCCACTGCTCCACCAACTAGCACAGATACATCTTCTCCAAAGGACTGCAATAGTGAAAGTGAAGTAACTAAAGACAGAAGTAATAAAGTACCTGCCGCTGTACACGAAAGAACGCAGCAGAAGAAAAGTAAAAATGAGAAAGAAAACAAGTTTAGTAACAATGCTGTTGAAGATAAGCCTGTTTTGTATAAAAAACAAGTCCGACATAAGTCTGAGGGAAAGATGCGTCCTCGCTCCTGGTCATCTGGATCCAGTGAGGCTGGCTCAAGTTCTAGTGGTAATCAAGGTGAATACAAGGCGTCGATGAAATGCATTAAAGTAAGACACAAAACAAGAGAGGTTCGAAATAAAAAAGGGCGTAATGGGCAAAGCAGGCTTGCAGTGAAATCTGGTGAAAAGGCCGATAGAAAAGTCCACAGCGGAAGCAGTAGCAGCAGTAGCAGCGGGTCCGTCAAACAGCTGTGCAAAAGAGGTAAAAGGCCATTAAAAGAAATTGGAAGAAAAGAAGCTGGCGGTAATGATGGAAAAGATTTGTACATAGACAGCAGAAATGAAAAGGAATATAAAGAAGAACCCTTGTGGTATACTGAGCCGATTACAGAGTACTTTGTTCCTCTTAGCAGAAAAAGCAAGCTGGAGACTACATACCGCAACAGAGAAGATATATGTGGCATAACATCAGAGGCTGTAGAAGAGTTGTCTGAATCAGTGCATGGTCTTTGTATTAGCAACAATAATGTTCATAAAACATACCTCGCAGCAGGTACTTTCATCGATGGTCACTTTGTAGAAATGCCTGCAGTTCTAAATGAGGATATTGACCTCGCTGGGACCTCAGTTTGTTCTCAACCAGAGGACGACAAATATTTAGATGATGTTCATCTGTCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGATATGATGCAAGGGGAGAGTCGGATTTTAAATATGATTCGACAGAAGAGTAAAGAAAAAAATGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGAATGGAGTTGCAAGGGGAAAGTGCAATATGGACAGATTCAACCAGCTCTGTTGGTGCTGAAGGGTGGTTCTTGCAAGACCTTAGTAATTTAGCTCAATTTTGGGAGTGCTGTTCATCTTCTAGTTCTGGCGATGCAGATGGAGAAAGTTTTGGAGGAGATTCTCCTATCAGATTCTCCCCCATCTTAGACAGCACAATGCTTAATTCACATATGCTTGCTGGCAATCAAGAGCTCTTTTCAGATATTAATGAAGGGTCTGGTATAAACTCTTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAACTCTGTTTTACCGTTTTCTTTTGAAACACTCAACTTGGGAAATGAAAATGCAGATTCTAGTAGCACTGCTAATATTCTTGGGAAAACACAGTCTAGGTTGCTAATATGGACCAAAAATAGTGCCTTCGATGAAAATGAACACTGTTCCAATCTTTCAACAAGAACTTGTAGTCCATGGTCACACTCAGAAGAAACACGTTCAGACAATGAGACTTTAAATATTCCGTATGAAGAATCCACGCAATTTAATGCAGAAGATATTAATTATGTAGTTCCTAGAGTGTCTTCAGGTTATGTAGATGAAGAAATTCTAGACTTTTTGCCAGAAGAAACCTGCCAGCAACAAGCTAGAACTTTAGGAGAAATGCCCGCTTTGATTTTCAAGAAAAAATCTAAGCTAGAATCTGTCTGTGGTATTCAGCTAGAACAAAAAGCAGAAAGTAAAGACTTTGAAACTACACAGGGGTGTAGTGCAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGATATTTGGACAAATATGCCAGACAGAAATTCTGCAGCAATGTTAGAAATAGAAGGAATAGAAGATGAATTGTTTTCAACTGATGTAAATAACTATTGCTGCTGTTTGGATACAGAAGCAAAAGTTGAAACCCTCCAGGAGCCCAATAAAGCAGTGCAGAGATCAGAGTATCACCTTTGGGAAGGTCAAAAAGAGAATTTAGAGAAGAGAGCGTTTGTCTCAAATGATTTATCAAAAGTAGATGGTGGTGACTATACTACACCGTCGAAACCTTGGGATGTTAACCAAGATAAAGAAAACTCATTTATACTTGGTGGTGTGTATGGGGAGCTGAAAACATTTAATAGTGATGGAGAATGGGCAGTGGTGCCACCTAGTCACTCAAAAGGGAGCTTATTGCAATGTGCAGCTTCTGATGTAGTGACAATTGCTGGTACAGATGTTTTTATGACTCCAGGTAATAGCTTTGCCCCTGGTCATAGGCAATTATGGAGGCCATTTGTATCATTTGAACAGAGCGATCAATCAAAGAGTGGAGATAATGGATTAAATAAGGGTTTTTCTTTTATCTTCCATGAAGACTTACTGGGAGCTTGTGGTAACTTTCAAGTTGAAGAACCAGGGCTTGAATACTCATTCTCTTCCTTTGACCTGAACAATCCATTTTCTCAAGTTCTTCATGTAGAGTGTTCATTTGAGCCAGAAGGAATTGCATCTTTCAGCCCTAGTTTTAAACCTAAGTCAATTCTGTGCTCTGATTCAGACAGTGAGGTTTTACACCCCAGGATATGTGGTGTTGATCGAACGCAATACAGGGCTATAAGGATTTCTCCAAGGACTCACTTTCGCCCAATTTCTGCATCTGAACTTTCTCCAGGTGGTGGAAGTGAGTCAGAATTTGAATCAGAAAAGGATGAGGGAAGTATTGCTGTCCCTTCTCAAGTAGATGTGTTTGAGGATCCACAAGCAGATCTCAAACCTCTGGAAGAAGATGCAGAAAAAGAAGGGCATTATTATGGAAAATCAGAGCTCGAATCTGGAAAATTTCTTCCCAGATTAAAAAAGTCTGGAATGGAGAAGAGTGCACAAACATCATTGGATTCCCAAGAAGAGTCCACTGGGATGTTACCAGTAGGAAACCAAGATCCGTGTTTAGAATGCAGTATGAAAGAATCCCTAGATGGGAGGGTGATGGAGAGCTCTAAAGTAAACTGCAGAATAGTGGAGCCGCGAGAGGAGACTAGCAGGTTTTGCAGTTGTAAAGCAGGATGCCATTTCCCCAGTTATGAAGATAATCCTGTTTCTTCAGGAGAGCTTGAAGAG
Seq C2 exon
TTTCCTGTATTGAATACTGATCTGCAGAGAATGAGTGGCAGCCAGGAAAAGCAGTGCTGGTGGGAAAAGGCGCTCTATTCTCCCCTTTTTCCTGCGTCACAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-'5-6,'5-4,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.317 C2=0.189
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
A:
PF153761=DUF4603=FE(85.5=100)
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]