RnoEX0048897 @ rn6
Exon Skipping
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79309847-79318481:+
Coord C1 exon
chr14:79309847-79313144
Coord A exon
chr14:79314439-79314507
Coord C2 exon
chr14:79318373-79318481
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCACCTGGTTCCAGATT
3' ss Score
6.8
5' ss Seq
CTAGTATGT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GAATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCTGAACTCTCCCCTGCAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAAGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTCGAGTCTGGGAAGTTCCTTCCTAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAGCAGGGATCCTGCCAGTGGGAAAACAAAGTCAGTGTTTGGAATGTAACTTTAATGAATCTCTGGGAATAAACTTAGAGAGCTCCACAGCAAACTGTAAAATAATGACACAATGTGAAGAGGAAATGAATGGTTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq A exon
ATTGGGAAGAAAGAAAATGAGGAAAGAAGCAAGAGTCTACCTACTACTACCATATTCCTTCGCTTTCTA
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAGAAGCAGAGCTGGTGGGAAAAGGCTTTGTACTCTCCCCTTTTTCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623_MULTIEX1-6/8=5-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.435 C2=0.180
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.6=100)
A:
PF153761=DUF4603=FE(1.7=100)
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Inclusion Isoform:
ENSRNOT00000029191fB7691
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCAAAGCAGGTTGTC
R:
CTGACGTGGGAAAAAGGGGAG
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]