Special

MmuEX0013590 @ mm9

Exon Skipping

Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36950587-36956388:-
Coord C1 exon
chr5:36955895-36956388
Coord A exon
chr5:36954527-36954595
Coord C2 exon
chr5:36950587-36950695
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCACCTGGTTCCAGATT
3' ss Score
6.8
5' ss Seq
CTAGTATGT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GAATCTCTCCCCGGACTCACTTTCGCCCGATTTCTGCATCTGAACTATCCCCTGGAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCGAGTGTTCCCATTCCTTCCCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAGGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTTGAGTCTGGGAAGTTCCTGCCCAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAACTGGGATTCTGCCGAAACAAAATCAGTGTTTGGAATGTAACTTTAACGAATCTCTAGAAATTAATTTAGAAAGCTCAGCAGCAAACTGTAAAATAATGACACAATGTGAGGAAGAGATGAGTGAGTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq A exon
ATTGGGAAGAAAGAAAATGAGGAAAGAAGCAAGATTCTACCTACTACTACCATATTCCTTCGCTTTCTA
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAAAAGCAGAGCTGGTGGGAAAAAGCTTTGTACTCTCCCCTTTTCCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.317 A=0.348 C2=0.270
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF153761=DUF4603=FE(85.6=100)

							
A:
PF153761=DUF4603=FE(1.7=100)

							
C2:
PF153761=DUF4603=PD(2.7=91.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000031091f2540A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000031091





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000084825, ENSMUSP00000116548
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:6866192-6866263 
ALTERNATIVE
HsaEX0033527
(KIAA0232)
Human
(hg19)
chr4:6867919-6867990 
ALTERNATIVE
HsaEX0033527
(KIAA0232)
Rat
(rn6)
chr14:79314439-79314507 
ALTERNATIVE
RnoEX0048897
(LOC680039)
Cow
(bosTau6)
chr6:118166164-118166232 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCAGTTGCAAAGCAGGTTGTC

				
R: 
CACTCTGACGTGGGGAAAAGG

				
Band lengths: 
175-244

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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