HsaEX0033527 @ hg19
Exon Skipping
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:28992]
Coordinates
chr4:6862628-6873409:+
Coord C1 exon
chr4:6862628-6865910
Coord A exon
chr4:6867919-6867990
Coord C2 exon
chr4:6873301-6873409
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCACCTGGTTCCAGATT
3' ss Score
6.8
5' ss Seq
CTAGTATGT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GGATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCCGAACTGTCCCCAGGAGGAGGAAGCGAGTCAGAATTTGAATCTGAGAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATATATTTGAAGATCCGCAGGCAGATCTCAAACCTTTGGAAGAAGATGCAGAGAAAGAAGGCCATTACTATGGAAAATCAGAGCTTGAGTCTGGAAAATTCCTTCCCAGGTTAAAAAAATCTGGGATGGAAAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAATCAACTGGGATTCTTTCAGTAGGAAAGCAAAATCAGTGTTTGGAATGTAGCATGAATGAATCCCTGGAAATAGATTTAGAAAGCTCAGAAGCAAATTGTAAAATAATGGCACAATGCGAGGAAGAAATTAATAATTTTTGTGGTTGCAAAGCAGGTTGTCAGTTTCCTGCTTATGAAGATAATCCAGTTTCTTCGGGACAGCTGGAAGAG
Seq A exon
ATTGGGAAGAAAGAAAAAGAGGAAAGAAGCAAGATTCTACATCATACCACTACCATATTCCTTCGCTTTCTA
Seq C2 exon
TTCCCTGTATTGAACACTGATATACAAGGAATGAATAGAAGTCAAGAAAAACAGACCTGGTGGGAAAAAGCCTTGTACTCTCCTCTTTTTCCTGCATCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.333 C2=0.270
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.5=100)
A:
PF153761=DUF4603=FE(1.8=100)
C2:
PF153761=DUF4603=PD(2.7=91.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAATGCGAGGAAGAAA
R:
CAAGGCTTTTTCCCACCAGGT
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)