MmuEX0013590 @ mm10
Exon Skipping
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36607938-36616534:-
Coord C1 exon
chr5:36613246-36616534
Coord A exon
chr5:36611878-36611946
Coord C2 exon
chr5:36607938-36608046
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCACCTGGTTCCAGATT
3' ss Score
6.8
5' ss Seq
CTAGTATGT
5' ss Score
4.69
Exon sequences
Seq C1 exon
CTATTCGAATCTCTCCCCGGACTCACTTTCGCCCGATTTCTGCATCTGAACTATCCCCTGGAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCGAGTGTTCCCATTCCTTCCCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAGGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTTGAGTCTGGGAAGTTCCTGCCCAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAACTGGGATTCTGCCGAAACAAAATCAGTGTTTGGAATGTAACTTTAACGAATCTCTAGAAATTAATTTAGAAAGCTCAGCAGCAAACTGTAAAATAATGACACAATGTGAGGAAGAGATGAGTGAGTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq A exon
ATTGGGAAGAAAGAAAATGAGGAAAGAAGCAAGATTCTACCTACTACTACCATATTCCTTCGCTTTCTA
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAAAAGCAGAGCTGGTGGGAAAAAGCTTTGTACTCTCCCCTTTTCCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.348 C2=0.196
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(81.7=99.4)
A:
PF153761=DUF4603=FE(1.7=100)
C2:
PF153761=DUF4603=PD(17.8=94.6)
Main Inclusion Isoform:
ENSMUST00000031091fB1201
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCAAAGCAGGTTGTC
R:
CACTCTGACGTGGGGAAAAGG
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types