BtaALTA0016281-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000793 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr16:65767609-65767960:+
Coord C1 exon
chr16:65767609-65767767
Coord A exon
chr16:65767861-65767870
Coord C2 exon
chr16:65767871-65767960
Length
10 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTGCTTATTTTTTCCTCAGGTA
3' ss Score
11.15
Exon sequences
Seq C1 exon
GAGATTGGGAGTCTGAACGTGGAGGCCAACGTGACAGCAGATGGAGCCTTGGCCATGGAGAAGGGACTGGCCACTCTCAAGAGTGAGATGAGGAAAGTGGAAGGAGAGCTGGCAAGGAAGGAGCGGGAGTTTGACGTGGATATGGACACAGTGCAGATG
Seq A exon
GTAATTACAG
Seq C2 exon
AAGCCCAGAGAGTTGACAGCAGAGCCAAGAATGCTGGAGTTACGATCCAAGACACACTCAACACATTGGATGGCATCCTACATCTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000793-28-25,28-24,28-23-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGGAAGGAGAGCTGGC
R:
AGCATTCTTGGCTCTGCTGTC
Band lengths:
102-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development