MmuALTA0009892-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026479 | Lamc2
Description
laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Coordinates
chr1:154973946-154974294:-
Coord C1 exon
chr1:154974136-154974294
Coord A exon
NA
Coord C2 exon
chr1:154973946-154974045
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGTACTCACTCGTCCTCAGGTG
3' ss Score
9.36
Exon sequences
Seq C1 exon
GAGATAGGGAGTCTGAACTTGGAAGCTAATGTGACAGCAGATGGGGCCTTGGCCATGGAGAAGGGACTGGCCACTCTGAAGAGCGAGATGAGAGAGATGGAGGGGGAGCTGGCCAGAAAGGAGCTGGAGTTTGACACGGATAAGGACACGGTGCAGCTG
Seq A exon
NA
Seq C2 exon
GTGATTACTGAAGCCCAGCAAGCTGATGCCAGAGCCACGAGTGCCGGAGTTACCATCCAAGACACACTCAACACATTGGACGGCATCCTACACCTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026479-23-23,23-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCTGAAGAGCGAGATG
R:
CAGCTTGCTGGGCTTCAGTAA
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: