BtaALTA0016282-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017473 | LAMC3
Description
laminin, gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
Coordinates
chr11:101302934-101304752:+
Coord C1 exon
chr11:101302934-101303081
Coord A exon
chr11:101304603-101304608
Coord C2 exon
chr11:101304609-101304752
Length
6 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGC
5' ss Score
4.61
3' ss Seq
AGCCCTCCATCTCCCGGCAGCCT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTACCAGGAGGTACAAGCGGCCCAGAAGGCGCTGGGCACGGCTGTGGCAGAGGCGCTGCCCGAAGCTGAGAGGGTGCTGGCCGCTGTGCAGCAAGCCGGCGTGGCCGCGGCCCTGCACCTGGCCTCACCTTCCGCCCCAGCATCACCG
Seq A exon
CCTCAG
Seq C2 exon
AAGTCCCAGGCCGAGGCCGTGAGCCTGAAGGTGCAGACGCTGGAGAAGACAGTCACATCGAGAGAGCACATGGTGACCGAGGCTGCCGGGTCCCTGCAGGCCACCGCCCAGGCCGTGCTGCAGGAGATGGAGCCCCTAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017473-33-30,33-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCTGGCCTCACCTT
R:
GTGACTGTCTTCTCCAGCGTC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development