HsaALTA0004694-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000050555 | LAMC3
Description
laminin subunit gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
Coordinates
chr9:131077187-131079298:+
Coord C1 exon
chr9:131077187-131077334
Coord A exon
chr9:131079149-131079154
Coord C2 exon
chr9:131079155-131079298
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGC
5' ss Score
3.85
3' ss Seq
AGCGCATTGTCTCCCTGCAGCCT
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTACCAGGAGGTCCAGGCGGCCCAGAAAGCACTGAGGACGGCTGTGGCAGAGGTGCTGCCTGAAGCGGAAAGCGTGTTGGCCACCGTGCAGCAAGTTGGCGCAGATACAGCCCCGTACCTGGCCTTGCTGGCTTCCCCGGGAGCTCTG
Seq A exon
CCTCAG
Seq C2 exon
AAGTCCCGGGCTGAAGACCTGGGCCTGAAGGCGAAGGCCCTGGAGAAGACAGTTGCATCATGGCAGCACATGGCCACTGAGGCTGCCCGAACCCTCCAGACTGCTGCCCAGGCGACGCTACGGCAAACAGAACCCCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050555-29-35,29-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATACAGCCCCGTACCTGG
R:
AACTGTCTTCTCCAGGGCCTT
Band lengths:
101-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development