GgaALTA1018054-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003852 | LAMC3
Description
laminin, gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
Coordinates
chr17:6075635-6076050:+
Coord C1 exon
chr17:6075635-6075779
Coord A exon
chr17:6075889-6075891
Coord C2 exon
chr17:6075892-6076050
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGTAGCTCTCTCCCCACAGCAG
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTATGAAGAAATCCAGCAGGCGTGGAAGGAGCTGGGTGCTGGCATGGAAGAGGTGGCAGTGGAAGCCAGGAGAACTCTCACAGCCATCCAGGAGGCAAATGTGGGCATGGCCAAGAAGCTTCAGCAGGTGCCTGCTCCAGGGCAG
Seq A exon
CAG
Seq C2 exon
GTGCTGCTGGTGCAAGCTGAGGCCCTAGCACAGGAGGTGGCAGCACTGGAGCAGACAGTGCAGGCGCAGGAGCCAGCAGCTTGGCAGAGCATCACAGCGTCCCTCAGCATGGCAGCTGGGCTGCGTCGGGACCTGCAGGGCACTCGAAGCTTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003852-26-37,26-36,26-35-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTCACAGCCATCCAGGA
R:
CTGTGCTAGGGCCTCAGCTT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]