BtaALTA0016794-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27070418-27070791:+
Coord C1 exon
chr2:27070418-27070485
Coord A exon
chr2:27070671-27070673
Coord C2 exon
chr2:27070674-27070791
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCTTCTTCTTCCCTCTTCGGCAG
3' ss Score
2.04
Exon sequences
Seq C1 exon
GTGTTCTAGTGGCTACGTGGGAGAATATTGTGAAATGGGGCTTTCCCAAGGCGTTCCTCCAGGAACAA
Seq A exon
CAG
Seq C2 exon
CGGCGTCCGTGCTATTGACAGTCATCTTGATCGTCATAATTGCTGCTTTAGCCACTTTAGGATTTCTCCACTATCGGAAAACTGGCTCCATTTTGCCTTCTCTGCCAAAGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-100-82,100-81-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTAGTGGCTACGTGGG
R:
TGACTGTCAATAGCACGGACG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development