GgaALTA0005742-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18333605-18333952:+
Coord C1 exon
chr7:18333605-18333672
Coord A exon
chr7:18333832-18333834
Coord C2 exon
chr7:18333835-18333952
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TATTCTTCTATCTTTGACAGCAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
ATGCTCTTATGGCTACACTGGAGATTATTGTGAAATAGGATTGTCAAAGGGAGTGCCTCCTGGAACAA
Seq A exon
CAG
Seq C2 exon
CAGTAGCAGTGCTGTTGACAGTCATACTAATCATAATAATTGGAGTGTTAGCGGTTGGAGGCTTCTTTAACTACAGACGGACAGGCTCCATTTTACCAGCGCTTCCCAAACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-90-98,90-97-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGTCAAAGGGAGTGCCT
R:
AAGAAGCCTCCAACCGCTAAC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]