BtaALTA0016820-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98150858-98158968:+
Coord C1 exon
chr5:98150858-98150983
Coord A exon
chr5:98158732-98158866
Coord C2 exon
chr5:98158867-98158968
Length
135 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CTCCCCCTATTCATTTGAAGAAC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GACAGCACCCTTGTGCTCAGGATAATGGTGGCTGTTCACATATCTGTCTTGTAAAGGGAGATGGTACTACAAGGTGTTCTTGCCCCATGCACTTGGTTCTTCTTCAGGATGAGCTATTATGTGGAG
Seq A exon
AACCCCCAACATGTTCTCCTCAGCAGTTTACTTGTTTCACGGGAGAAATTGACTGTATCCCTGTGGCTTGGCGGTGTGATGGGTTTACTGAATGTGAAGACCACAGTGATGAACTCAATTGTCCTGTGTGCTCAG
Seq C2 exon
AGTCCCAGTTCCAGTGCGCCAGTGGACAGTGTATCGATGGTGCCCTGCGATGCAACGGAGACGCGAACTGCCAGGATAAGTCAGATGAGAAGAACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761-25-34,25-33,25-32,25-31-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=48.8),PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTCAGGATAATGGTGGC
R:
CTTCACAGTTCTTCTCATCTGACT
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development