RnoALTA0022386-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006338 | Lrp6
Description
LDL receptor related protein 6 [Source:RGD Symbol;Acc:1304749]
Coordinates
chr4:168205149-168213507:-
Coord C1 exon
chr4:168213382-168213507
Coord A exon
chr4:168205360-168205385
Coord C2 exon
chr4:168205149-168205359
Length
26 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CTTCCATTGTTCTTGTGAAGAGC
3' ss Score
5.18
Exon sequences
Seq C1 exon
GACAGCACCCGTGTGCCCAGGATAATGGTGGCTGTTCACATATTTGCCTTGTAAAAGGAGATGGTACCACAAGATGCTCCTGTCCCATGCATTTAGTTCTGCTTCAGGATGAGCTGTCCTGTGGAG
Seq A exon
AGCCTCCAACATGTTCTCCTCAGCAG
Seq C2 exon
TTTACGTGTTTCACTGGGGACATTGACTGCATCCCTGTGGCCTGGCGGTGTGATGGGTTTACTGAATGTGAAGACCACAGTGATGAGCTCAACTGTCCTGTGTGCTCGGAGTCTCAGTTCCAGTGTGCCAGCGGGCAGTGCATTGACGGCGCCCTTCGATGCAATGGTGACGCGAACTGCCAGGATAAATCGGATGAGAAGAACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006338-24-33,24-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=48.8),PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTCCTGTCCCATGCATT
R:
TCAGTAAACCCATCACACCGC
Band lengths:
119-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]