BtaALTA0017013-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15792413-15795519:+
Coord C1 exon
chr11:15792413-15792580
Coord A exon
NA
Coord C2 exon
chr11:15795451-15795519
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCATCCTCCACCTCTCCCAGCCA
3' ss Score
5.66
Exon sequences
Seq C1 exon
CGGACACCCCTGTGATCTCGGAAGAGAAAGGGCCGTGTTACCGACTGGTCAGTTCCGGAAGGCAGTGTATGCACCCTCTGTCTGTCCACCTCACCAAGCAGCTCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCGCACTGTGAGAAATGCCCCCTTCCAGGCACAG
Seq A exon
NA
Seq C2 exon
CCAAGGAAGAACCAGTGGAGGCCCTGACCTTCTCCCGGGAACAGGGGCCAGGAGCGGTGGAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-40-29,40-28,40-27-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.772
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
NA
C2:
PF0068312=TB=PD(7.5=12.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAAGGGCCGTGTTACC
R:
GCCTCCACTGGTTCTTCCTTG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development