BtaALTA0017592-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47814154-47826278:-
Coord C1 exon
chr2:47825070-47826278
Coord A exon
chr2:47814228-47814266
Coord C2 exon
chr2:47814154-47814227
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAC
5' ss Score
7.64
3' ss Seq
AACAGTGTTAACAATTGCAGGTC
3' ss Score
5.66
Exon sequences
Seq C1 exon
AAGGGGATAAGATTTTGGAGGAGAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAGGAGAGACTAGAGAACACTGTGGAAAGATGCGCACACATTAACGGGAACAGATCTCGGCAGAGTCGGGGCTTTGGAGAGCTGCTGAGCACCACAAAGCAAGACTTTGTCCTAGAGGAGCAATCTCCGAGCTCCTCCAATAGTTTGGAGAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAACATTAACGGGTGTGTACCTAGCCCTTCAGACGCTAAAAGCATTAGTAGTGAAGATGACCTAAGGAACCCAGACTCCCCCTCTTCAAATGAATTGATCCCTTATAGGCCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTAGTCAGAGAAGACGACGTTCACAGTTCTTGTCAACAAAGCCCCGAGGAAGGGAAG
Seq A exon
GTCTGGGTAATGTGGTCTGGTCTTCATGCCTTCACTCAG
Seq C2 exon
GTGGAGCCCGAGAAGTTGAAGACACTAACGGAAGGTTTAGAAGCCTACAGCCGAGCCCGGAAAAGGAACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-13-16,13-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.4)
A:
NA
C2:
PF0085512=PWWP=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCCAAATCAAAGGACTG
R:
CTTCAACTTCTCGGGCTCCAC
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development