GgaALTA0006543-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34186949-34193639:+
Coord C1 exon
chr7:34186949-34188157
Coord A exon
chr7:34193527-34193565
Coord C2 exon
chr7:34193566-34193639
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
GCAGTGTTTGATAATTGCAGGTC
3' ss Score
5.62
Exon sequences
Seq C1 exon
AAAGTGATAAAATGTTGGAGGAGAATTTCAGGTATAACAATTACAAAAGAACTATGATGAGTTTTAAGGAAAGACTGGAGAACACTGTGGAACGCTGTGCACACATAAATGGAAATAGGCCTCAGCAGAACAGAGGATACGGGGAGTTGCTGAACACTTCTAAACAAGACCTGATTCTGGAAGAGCAATCTCCAAGTTCCTCAAATAGTTTGGAAAGTTCGTTAGTTAAAGACTACATCCATTACAATGGAGATTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGCCCTTCAGATGCTAAAAGCATCAGTAGTGAAGATGACCTAAGGAATCCAGATTCCCCTTCTTCAAATGAGCTGATACATTACAGGCCGAGGACGTTCAATGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCATGGCCTGGAAAACTAGTAAGAGAAGAAGACGTTCACAATTCATGTCAACAGAACGCTGAGGAGGGGAAG
Seq A exon
GTCTGGGTAATGTGGTTTGGTGTTCATACCTTCACTCAG
Seq C2 exon
GTGGAGCCAGAGAAGTTGAAGACACTAACAGAAGGTCTAGAAGCTTACAACCGAGCCAGGAAAAGGAACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-22-16,22-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.920
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.4)
A:
NA
C2:
PF0085512=PWWP=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCCAAATCAAAGGACTG
R:
TCTTCAACTTCTCTGGCTCCAC
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]