BtaALTA0018373-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015962 | MMADHC
Description
Bos taurus methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria (MMADHC), mRNA. [Source:RefSeq mRNA;Acc:NM_001034541]
Coordinates
chr2:46649083-46652390:+
Coord C1 exon
chr2:46649083-46649142
Coord A exon
chr2:46652246-46652285
Coord C2 exon
chr2:46652286-46652390
Length
40 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GGGTTTTGTGTCATTCTTAGGTG
3' ss Score
9.15
Exon sequences
Seq C1 exon
GAATAACTTTACAAAAGGGAAGATAATTTCCGTCTGCCCTTTCCGCCAGAAATGGCCAAT
Seq A exon
GTGCTCTGTAACAGAGCCAGACTGATTTCCTATCTCCCAG
Seq C2 exon
GATTTTGCTCTTTAGTTAAAAGGGTTGTCAATCCCAGAGCCTTTTCAACTGCAGGATCTTCAGGTTCTGATGAGTCTCATGTGGCCACTGCACCTCCAGATATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015962-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102294=DUF2246=PU(11.6=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCGTCTGCCCTTTCCG
R:
GATATCTGGAGGTGCAGTGGC
Band lengths:
140-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development