DreALTA0017134-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000005870 | mmadhc
Description
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:ZFIN;Acc:ZDB-GENE-040704-50]
Coordinates
chr9:23239909-23240255:+
Coord C1 exon
chr9:23239909-23239947
Coord A exon
chr9:23240117-23240127
Coord C2 exon
chr9:23240128-23240255
Length
11 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TGTTTGCTGTGTTTTGTCAGGTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTGAACCGTAAACAAGAGAAGCCCAACAGGATGGCCAGT
Seq A exon
GTGCTCTGCAG
Seq C2 exon
CAGAGCTCGACTGGTGACGTACCTACCAGGGCTTCATGTTCTAGTTCATCGTGTTGTTGGAGCAAGAAGTTTCTCTGGGGCGTCAGGATCAGATGAGCCACACCTGAACACCTCAACTCCTGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005870-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102294=DUF2246=PU(10.9=63.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAGCCCAACAGGATGG
R:
GCCCCAGAGAAACTTCTTGCT
Band lengths:
107-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]