BtaALTA0018794-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084130-51084377:+
Coord C1 exon
chr22:51084130-51084165
Coord A exon
chr22:51084257-51084261
Coord C2 exon
chr22:51084262-51084377
Length
5 bp
Sequences
Splice sites
5' ss Seq
CACGTATGG
5' ss Score
4.53
3' ss Seq
CAGCACACTCTGTCCCCTAGACC
3' ss Score
5.59
Exon sequences
Seq C1 exon
ATGATGACCAACAGCCGTCCATCCTGGAGACTGCAC
Seq A exon
ACCAG
Seq C2 exon
GTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-14-13,14-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=41.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCAACAGCCGTCCATC
R:
GACCACACGCAGCTTGGAG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development