MmuALTA0011342-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:107985810-107986033:+
Coord C1 exon
chr9:107985810-107985845
Coord A exon
chr9:107985925-107985929
Coord C2 exon
chr9:107985930-107986033
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCATCCTGCCCCATCCCCAGACC
3' ss Score
8.49
Exon sequences
Seq C1 exon
ATGATGACCAGCCACCATCCATTCTGGACCCCCCAG
Seq A exon
ACCAG
Seq C2 exon
GTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTGGGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-13-14,13-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=45.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGCCACCATCCATTCTG
R:
CCTCCCACCACACGAAGTTTA
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: