BtaALTA0019076-3/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30132692-30134757:-
Coord C1 exon
chr19:30134735-30134757
Coord A exon
chr19:30132791-30132931
Coord C2 exon
chr19:30132692-30132790
Length
141 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTCTTCCTCTGCCAGGCAGGGT
3' ss Score
3.5
Exon sequences
Seq C1 exon
CACTTCAAGGTTGCATCTCCAAG
Seq A exon
GGTCTTTGATTGGGCTGCCATCAATAAACTGCAGCCATGAGTTCAGACCAGGAAATGGCTGTTTTTGGGGAGGCCGCTCCTTACCTCCGAAAGTCTGAAAAGGAGCGCATTGAGGCCCAGAATAAGCCTTTCGATGCCAAG
Seq C2 exon
ACCTCAGTCTTCGTGGCGGACCCTAAGGAGTCCTTCGTGAAAGCAACTGTGCAGAGCAGGGAAGGGGGGAAGGTGACGGCCAAGACCGAGGCTGGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204-0-4,0-3,0-2,0-1-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.176
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCAAGGTTGCATCTCCA
R:
CCCCAGCCTCGGTCTTGG
Band lengths:
120-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development