GgaALTA1020763-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026748 | MYH1A
Description
myosin, heavy chain 1A, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001013414]
Coordinates
chr18:448803-451434:-
Coord C1 exon
chr18:451388-451434
Coord A exon
chr18:449014-449043
Coord C2 exon
chr18:448803-449013
Length
30 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACATATCTGCTCTTCCATAGTGT
3' ss Score
7.65
Exon sequences
Seq C1 exon
CTCTGATCATCTTCCAGTCAGCACAAGACCTTCTTGTGTCACAAGAG
Seq A exon
TGTTCTCTGCTGACAAGACTCTCCATACAG
Seq C2 exon
TGCAGCCATGTCTTCAGATTCTGAAATGGCCATATTTGGGGAGGCCGCTCCCTACCTCCGAAAGTCAGAGAAGGAACGAATCGAGGCCCAGAACAAGCCTTTTGATGCCAAGTCATCAGTCTTTGTGGTGCATCCCAAAGAATCTTTTGTGAAAGGGACTATCCAGAGCAAAGAAACAGGGAAGGTCACTGTCAAGACTGAAGGTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026748-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.176
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCAGCACAAGACCTTC
R:
GGCCTCGATTCGTTCCTTCTC
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]