BtaALTA0019094-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14227226-14228823:-
Coord C1 exon
chr25:14228615-14228823
Coord A exon
chr25:14227329-14227330
Coord C2 exon
chr25:14227226-14227328
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGCTTGCCCCGTGTGCGCAGAGA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GCGGAGCAGCTCAGCAACGAGCTGGCCACGGAGCGCAGTGCAGCCCAGAAGAATGAGAACGCGCGGCAGCAGCTTGAGCGGCAGAATAAGGAGCTGCGGAGCAAGCTGCAGGAGATGGAGGGGGCAGTCAAGTCCAAGTTCAAGTCCACCATTGCGGCCCTGGAGGCCAAGATCGCACAGCTGGAGGAGCAGGTGGAGCAGGAGGCCAG
Seq A exon
AG
Seq C2 exon
AGAAACAGGCGACCGCCAAGGCACTGAAGCAGAAGGACAAGAAGCTGAAGGAGGCCCTGCTGCAGGTGGAGGATGAGCGCAAGATGGCGGAGCAGTACAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988-53-54,53-53-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATCGCACAGCTGGAGG
R:
GCCTCCTTCAGCTTCTTGTCC
Band lengths:
97-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development