RnoALTA0025236-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:852030-852784:+
Coord C1 exon
chr10:852030-852238
Coord A exon
chr10:852680-852681
Coord C2 exon
chr10:852682-852784
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTCTTTCTTCCCCATAACAGAGA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GCTGAGCAACTGAGCAATGAGCTGGTCACTGAGCGCAGTGCAGCTCAGAAGAATGAGAGTGCACGGCAACAGCTGGAGCGCCAGAACAAGGAACTCCGAAGCAAGTTGCAGGAGGTAGAAGGTGCTGTCAAAGCCAAGCTTAAGTCCACTGTTGCGGCACTAGAGGCCAAGATTGTGCAGCTGGAGGAGCAGATTGAACAAGAGGCCAG
Seq A exon
AG
Seq C2 exon
AAAAACAGGCAGCCACCAAGTTGCTGAAGCAAAAGGACAAGAAGCTAAAGGAGGTCCTACTGCAGGTGGAGGATGAGCGCAAGATGGTGGAGCAGTACAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-60-71,60-70-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=0.459
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTAAGTCCACTGTTGCGG
R:
ACTTGGTGGCTGCCTGTTTTT
Band lengths:
94-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]