BtaALTA0019095-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14221620-14227142:-
Coord C1 exon
chr25:14226970-14227142
Coord A exon
NA
Coord C2 exon
chr25:14221620-14221658
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTCTCTCTCTCTGTTTCAGAGC
3' ss Score
12.94
Exon sequences
Seq C1 exon
GCCGAGAAAGGAAACCTGAGGGTCAAGCAACTCAAGAGGCAGCTGGAGGAGGCGGAGGAGGAGTCCCAGCGCATCAATGCCAACCGCAGGAAACTGCAGCGTGAGCTGGACGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCGAGGTGACGGCGCTCAAGAGCAAGCTCAG
Seq A exon
NA
Seq C2 exon
AGCCCCCCTCCCCCAGGAAACTCCGCAATGACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988-56-57,56-56-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=9.1)
Main Inclusion Isoform:
ENSBTAT00000035455fB4517
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCCAGCGCATCAATG
R:
AGTCATTGCGGAGTTTCCTGG
Band lengths:
147-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development