RnoALTA0025238-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:852889-855683:+
Coord C1 exon
chr10:852889-853061
Coord A exon
chr10:855645-855646
Coord C2 exon
chr10:855647-855683
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GGGGACTCTCTCTGTTTCAGAGG
3' ss Score
7.99
Exon sequences
Seq C1 exon
GCAGAGAAAGGAAACACCAAGGTCAAGCAGCTCAAGAGGCAGCTGGAAGAGGCCGAGGAGGAATCCCAGCGCATCAATGCCAACCGCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACTGAGAGCAATGAGGCCATGGGCCGTGAGGTGAATGCCCTCAAGAGCAAACTCAG
Seq A exon
AG
Seq C2 exon
GGCCCCCCCCACAAGAAACTTCGCAGTGAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-64-76,64-75,64-74-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=9.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCACTGAGAGCAATGAG
R:
GTGGCTCACTGCGAAGTTTCT
Band lengths:
96-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]