BtaALTA0019260-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57398759-57400229:+
Coord C1 exon
chr15:57398759-57398885
Coord A exon
NA
Coord C2 exon
chr15:57400060-57400229
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TCTCCGTGTTGGTCATGCAGGGG
3' ss Score
7.63
Exon sequences
Seq C1 exon
GCCCCAACCTCCCCAAGAACGACGTCATTGTGGCGGTCAACTGGACAGGTGTCTACTTTGTGGATGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTCCCCGAGATCATGGCCGTGTCCAGCAGTAG
Seq A exon
NA
Seq C2 exon
GGGAGCGAAGTTGGCGGCCCCCAGCTTCACGCTGGCCACCATCAAGGGGGATGAGTACACCTTCACCTCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTCCTGGAGGGGCTCCGCAAGAGGTCTAAGTATGTGGTGGCCCTGCAGGACAACCCCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-35-39,35-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(13.6=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGAACGACGTCATTGT
R:
ACTCATCCCCCTTGATGGTGG
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development