GgaALTA1020952-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192367148-192367548:-
Coord C1 exon
chr1:192367422-192367548
Coord A exon
chr1:192367238-192367317
Coord C2 exon
chr1:192367148-192367237
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCTATAAAAACATATCCCAGGGG
3' ss Score
2.1
Exon sequences
Seq C1 exon
GGCCAAGCCTACCTAAAAATGATGTAATTGTGGCTGTCAACTGGACAGGAGTGTACTTTGTGGATGAGCAGGAGCAGGTTCTCTTGGAGCTCTCTTTTCCAGAGATCACAGCTGTGTCAAGCAGCAG
Seq A exon
GGGGGGAAAGCTGCAAGGGCAGAGTTTCACCTTGGCCACCATTAAAGCAGATGAATACACTTTCACCTCCAACAATGCAG
Seq C2 exon
AGGATATCCGGGACCTGGTAGTGACATTCCTTGAGGGACTAAGAAAAAGATCCAAGTATGTGGTCACTCTCCAAGACAACCCAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-46-46,46-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGGAGTGTACTTTGTGG
R:
CAGGGTTTGGGTTGTCTTGGA
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]