BtaALTA0019261-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57399967-57401235:+
Coord C1 exon
chr15:57399967-57400229
Coord A exon
NA
Coord C2 exon
chr15:57401162-57401235
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CGCCCACCTCTGCCTTCCAGCGG
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGAGTGCCGTATCTTGCTCTCGCTGGGCTGCTCTGACCTGGGCTGTGCTGGACTGACCCCGACGGGGCCCTGTTCTCCGTGTTGGTCATGCAGGGGAGCGAAGTTGGCGGCCCCCAGCTTCACGCTGGCCACCATCAAGGGGGATGAGTACACCTTCACCTCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTCCTGGAGGGGCTCCGCAAGAGGTCTAAGTATGTGGTGGCCCTGCAGGACAACCCCAACCCTG
Seq A exon
NA
Seq C2 exon
CGGGCGAGGAGTCCGGCTTCCTCAGCTTCGCCAAGGGGGACCTCCTCATCCTGGACCACGACACGGGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-36-41,36-40-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=9.0)
A:
NA
C2:
PF146041=SH3_9=PD(84.7=78.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACACCTTCACCTCCAGCA
R:
GTGGTCCAGGATGAGGAGGTC
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development