MmuALTA1021905-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98064734-98065895:-
Coord C1 exon
chr7:98065612-98065895
Coord A exon
chr7:98064851-98064924
Coord C2 exon
chr7:98064734-98064850
Length
74 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCTCACCCCTGCTTCTAAGCTG
3' ss Score
3.54
Exon sequences
Seq C1 exon
GGAGTGCCGCGTCTTGCTCTCACTGGGCTGCTCTGACTTGGGCTGTGCTACTTGTCAATCGGGCCGGGCAGGGCTGACCCCGGCTGGACCCTGTTCTCCGTGTTGGTCCTGTAGGGGAACAAAGATGATGGCCCCCAGCTTTACCCTGGCCACCATCAAAGGAGATGAGTACACCTTCACATCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTACGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCTAACCCTG
Seq A exon
CTGGTGAGGAGTCAGGCTTCCTCAGCTTCGCCAAGGGAGACCTCATCATCCTTGACCATGATACTGGTGAGCAG
Seq C2 exon
GTCATGAACTCAGGCTGGGCCAACGGCATCAACGAGAGGACCAAGCAGCGCGGCGACTTCCCCACTGACTGTGTATACGTCATGCCCACTGTCACCTTGCCACCAAGGGAGATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-70-63,70-62-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
NA
C2:
PF146041=SH3_9=PD(84.7=78.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTACGGAAGAGGTCTAA
R:
CACAATCTCCCTTGGTGGCAA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types