BtaALTA0019262-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57403959-57405622:+
Coord C1 exon
chr15:57403959-57404121
Coord A exon
NA
Coord C2 exon
chr15:57405552-57405622
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
TCCTCCTGCCCCACGTGCAGCGC
3' ss Score
7.69
Exon sequences
Seq C1 exon
GCTCCCCACCTGTGCTCAAGTACATGGGTGACTACCCGTCCAAGAGGATGCGCTCCGTCAATGAGCTCACCGACCAGATCTTCGAGGGAGCCCTGAAGGCCGAGCCCCTCAAGGACGAGGTGTATGTGCAGATCCTGAAGCAGCTGACTGACAACCACATCAG
Seq A exon
NA
Seq C2 exon
CGCTTCCTGCAGTCCCGCAAACACTGCCCACTTGCCATCGACTGCCTGCAGCGACTTCAGAAAGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-41-47,41-46-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=67.3)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGAGCTCACCGACCAG
R:
CTCAGGGCTTTCTGAAGTCGC
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development