BtaALTA0019262-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57403959-57405622:+
Coord C1 exon
chr15:57403959-57404121
Coord A exon
chr15:57405467-57405551
Coord C2 exon
chr15:57405552-57405622
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
CACCATGCCTCTTCCCGCAGGTA
3' ss Score
11.16
Exon sequences
Seq C1 exon
GCTCCCCACCTGTGCTCAAGTACATGGGTGACTACCCGTCCAAGAGGATGCGCTCCGTCAATGAGCTCACCGACCAGATCTTCGAGGGAGCCCTGAAGGCCGAGCCCCTCAAGGACGAGGTGTATGTGCAGATCCTGAAGCAGCTGACTGACAACCACATCAG
Seq A exon
GTACAGTGAGGAGCGGGGCTGGGAGCTACTCTGGTTGTGCACAGGGCTCTTCCCACCCAGCAACATCCTCCTGCCCCACGTGCAG
Seq C2 exon
CGCTTCCTGCAGTCCCGCAAACACTGCCCACTTGCCATCGACTGCCTGCAGCGACTTCAGAAAGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-41-47,41-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=67.3)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGAGCTCACCGACCAG
R:
CTCAGGGCTTTCTGAAGTCGC
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development