MmuALTA1021906-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98057311-98062728:-
Coord C1 exon
chr7:98062575-98062728
Coord A exon
chr7:98057461-98057466
Coord C2 exon
chr7:98057311-98057460
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGGTCCTTTTCCCACAGGTA
3' ss Score
11.89
Exon sequences
Seq C1 exon
CTGTGCTCAAGTACATGGGCGACTACCCATCCAAGAGGATGCGATCCGTCAATGAGCTCACTGACCAGATCTTTGAGTGGGCACTCAAGGCTGAGCCCCTCAAGGATGAGGCCTACGTGCAGATCCTGAAGCAGCTGACTGACAATCACATCAG
Seq A exon
GTACAG
Seq C2 exon
CGAAGAGAGGGGCTGGGAACTGCTGTGGCTGTGCACGGGCCTCTTCCCGCCCAGCAACATCCTCCTGCCTCATGTTCAGCGGTTTCTGCAGTCCCGCAAGCACTGTCCTCTTGCCATTGACTGCCTGCAGAGGCTCCAGAAAGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-76-70,76-69-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=71.2)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCCTGAAGCAGCTGACTG
R:
ATGAGGCAGGAGGATGTTGCT
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types