BtaALTA0019680-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105886367-105886956:-
Coord C1 exon
chr11:105886747-105886956
Coord A exon
chr11:105886481-105886561
Coord C2 exon
chr11:105886367-105886480
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CTCGCCTCCTTCCTCTGCAGCTT
3' ss Score
10.97
Exon sequences
Seq C1 exon
TTGGCCCTCCAAGTTCACCCTGCAGTTCCTCAAGGACACCCCCAGCTCAGGCCCGGAGGAGCTGTGTGCGGCCGGAACAGACCCTCAGGGACCCCCTTCAGAGCTACAGCCGTTCCTGGCACCCATGGTCAGCAATCAGAGGGTCACGGGGCCCTCGCACTTCCAGGATGTTCGGCTGATTGAGTTCGACATCTCGGGCTCTGGGATCAG
Seq A exon
CTTCCCGGAGCCCCCAGCGTCCTCCCCCCGCAGGCGGGCCCCTCCCCAGGCCCTGGCTGTCCCTCCCACACAGCTTTGCAG
Seq C2 exon
CTGGTGACCTGGTGCTGATCCAGCCCGAGAACACGGCCAGCCACGTCCAGCAGTTCTGCCAGGCGCTGGGCCTGGACCCCGAGCAGCACTTCACACTGCAGCCCCGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-10-13,10-12,10-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PU(18.1=56.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAATCAGAGGGTCACG
R:
CAGTGTGAAGTGCTGCTCGG
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development