BtaINT0100318 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105886367-105886956:-
Coord C1 exon
chr11:105886747-105886956
Coord A exon
chr11:105886489-105886746
Coord C2 exon
chr11:105886367-105886488
Length
258 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TGGCTGTCCCTCCCACACAGCTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
TTGGCCCTCCAAGTTCACCCTGCAGTTCCTCAAGGACACCCCCAGCTCAGGCCCGGAGGAGCTGTGTGCGGCCGGAACAGACCCTCAGGGACCCCCTTCAGAGCTACAGCCGTTCCTGGCACCCATGGTCAGCAATCAGAGGGTCACGGGGCCCTCGCACTTCCAGGATGTTCGGCTGATTGAGTTCGACATCTCGGGCTCTGGGATCAG
Seq A exon
GTGCGGGTCGGCGCCGGGGGCCCATGGGGGCAGGGCTGCGCAGGAGCCCTGGTCCAGGTTTCAGCCGCTCTTCTCCCGAAGTGGGTGCACGTCAGGGCCGAGAACGGGGATGACAGCCGGGGAGGCAGGACCCCTCCGTCCAGGGGCCCCCTAGCCTCCCTGGCCCTCGCCTCCTTCCTCTGCAGCTTCCCGGAGCCCCCAGCGTCCTCCCCCCGCAGGCGGGCCCCTCCCCAGGCCCTGGCTGTCCCTCCCACACAG
Seq C2 exon
CTTTGCAGCTGGTGACCTGGTGCTGATCCAGCCCGAGAACACGGCCAGCCACGTCCAGCAGTTCTGCCAGGCGCTGGGCCTGGACCCCGAGCAGCACTTCACACTGCAGCCCCGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PU(18.1=56.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTTCCTCAAGGACACC
R:
CAGTGTGAAGTGCTGCTCGG
Band lengths:
297-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development